GenVisR
This is the development version of GenVisR; for the stable release version, see GenVisR.
All Bioconductor versions of GenVisR
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3
Genomic Visualizations in R
Bioconductor version: 3.24 · Package version: 1.45.0
Produce highly customizable publication quality graphics for genomic data primarily at the cohort level.
Author: Zachary Skidmore [aut, cre], Alex Wagner [aut], Robert Lesurf [aut], Katie Campbell [aut], Jason Kunisaki [aut], Obi Griffith [aut], Malachi Griffith [aut]
Maintainer: Zachary Skidmore <zlskidmore at gmail.com>
Citation
From within R, enter citation("GenVisR"):
Zachary Skidmore, Alex Wagner, Robert Lesurf, Katie Campbell, Jason Kunisaki, Obi Griffith, Malachi Griffith. GenVisR: Genomic Visualizations in R. doi:10.18129/B9.bioc.GenVisR, R package version 1.45.0, https://bioconductor.org/packages/GenVisR.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("GenVisR")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.45.0 |
| License | GPL-3 + file LICENSE |
| Bug Reports | https://github.com/griffithlab/GenVisR/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.3 (R-3.3) (10 years) |
| Downloads rank | 429 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Classification, DNASeq, DataRepresentation, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/GenVisR/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenVisR")| GenVisR: An introduction | HTML | R Script |
| waterfall: function introduction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GenVisR_1.45.0.tar.gz |
| Windows binary (x86_64) | GenVisR_1.45.0.zip |
| macOS binary (arm64) | GenVisR_1.45.0.tgz |
| macOS binary (x86_64) | GenVisR_1.45.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GenVisR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenVisR |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.3.0), methods
Imports: AnnotationDbi, biomaRt (>= 2.45.8), BiocGenerics, Biostrings, DBI, GenomicFeatures, GenomicRanges (>= 1.25.4), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0), gtable, gtools, IRanges (>= 2.7.5), plyr (>= 1.8.3), reshape2, Rsamtools, scales, viridis, data.table, BSgenome, Seqinfo, VariantAnnotation
Suggests: BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, RMySQL, roxygen2, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, rmarkdown, vdiffr, formatR, TxDb.Hsapiens.UCSC.hg38.knownGene, BSgenome.Hsapiens.UCSC.hg38