GeneExpressionSignature
Gene Expression Signature based Similarity Metric
Bioconductor version: 3.24 · Package version: 1.59.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneExpressionSignature")Details
| Maintainer | Yang Cao <yiluheihei@gmail.com> |
| Author | Yang Cao [aut, cre], Fei Li [ctb], Lu Han [ctb] |
| License | GPL-2 |
| URL | https://github.com/yiluheihei/GeneExpressionSignature |
| Bug Reports | https://github.com/yiluheihei/GeneExpressionSignature/issues/ |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, Software |
| Package Short Url | https://bioconductor.org/packages/GeneExpressionSignature/ |
Citation
From within R, enter citation("GeneExpressionSignature"):
Yang Cao. GeneExpressionSignature: Gene Expression Signature based Similarity Metric. doi:10.18129/B9.bioc.GeneExpressionSignature, R package version 1.59.0, https://bioconductor.org/packages/GeneExpressionSignature.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GeneExpressionSignature_1.59.0.tar.gz |
| Windows binary (x86_64) | GeneExpressionSignature_1.59.0.zip |
| macOS binary (arm64) | GeneExpressionSignature_1.59.0.tgz |
| macOS binary (x86_64) | GeneExpressionSignature_1.59.0.tgz |