GenomicFiles
Distributed computing by file or by range
Bioconductor version: 3.24 · Package version: 1.49.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicFiles")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Bioconductor Package Maintainer [aut, cre], Valerie Obenchain [aut], Michael Love [aut], Lori Shepherd [aut], Martin Morgan [aut], Sonali Kumari [ctb] (Converted 'GenomicFiles' vignettes from Sweave to RMarkdown / HTML.) |
| License | Artistic-2.0 |
| URL | https://github.com/Bioconductor/GenomicFiles |
| Bug Reports | https://github.com/Bioconductor/GenomicFiles/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Coverage, DataImport, Genetics, Infrastructure, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/GenomicFiles/ |
Citation
From within R, enter citation("GenomicFiles"):
Bioconductor Package Maintainer, Valerie Obenchain, Michael Love, Lori Shepherd, Martin Morgan. GenomicFiles: Distributed computing by file or by range. doi:10.18129/B9.bioc.GenomicFiles, R package version 1.49.0, https://bioconductor.org/packages/GenomicFiles.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GenomicFiles_1.49.0.tar.gz |
| Windows binary (x86_64) | GenomicFiles_1.49.0.zip |
| macOS binary (arm64) | GenomicFiles_1.49.0.tgz |
| macOS binary (x86_64) | GenomicFiles_1.49.0.tgz |
Dependencies
Depends: BiocGenerics, BiocParallel, GenomicRanges, MatrixGenerics, methods, Rsamtools (>= 2.25.1), rtracklayer (>= 1.69.1), SummarizedExperiment (>= 1.39.1)
Imports: BiocBaseUtils, GenomeInfoDb (>= 1.45.7), GenomicAlignments (>= 1.45.1), IRanges, S4Vectors, Seqinfo, VariantAnnotation (>= 1.55.1)
Suggests: BiocStyle, Biostrings, deepSNV, genefilter, Homo.sapiens, knitr, RNAseqData.HNRNPC.bam.chr14, RUnit, snpStats
Reverse dependencies
Depends On Me (1): IntEREst
Imports Me (7): CAGEfightR, derfinder, gDNAx, QuasR, Rqc, TFutils, VCFArray
Suggests Me (3): ldblock, MungeSumstats, S4Cartographer