HDTD
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
Bioconductor version: 3.24 · Package version: 1.47.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Characterization of intra-individual variability using physiologically relevant measurements provides important insights into fundamental biological questions ranging from cell type identity to tumor development. For each individual, the data measurements can be written as a matrix with the different subsamples of the individual recorded in the columns and the different phenotypic units recorded in the rows. Datasets of this type are called high-dimensional transposable data. The HDTD package provides functions for conducting statistical inference for the mean relationship between the row and column variables and for the covariance structure within and between the row and column variables.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HDTD")Details
| Maintainer | Anestis Touloumis <A.Touloumis@brighton.ac.uk> |
| Author | Anestis Touloumis [cre, aut] (ORCID: <https://orcid.org/0000-0002-5965-1639>), John C. Marioni [aut] (ORCID: <https://orcid.org/0000-0001-9092-0852>), Simon Tavar\'{e} [aut] (ORCID: <https://orcid.org/0000-0002-3716-4952>) |
| License | GPL-3 |
| URL | http://github.com/AnestisTouloumis/HDTD |
| Bug Reports | http://github.com/AnestisTouloumis/HDTD/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, GeneExpression, Genetics, Microarray, Sequencing, Software, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/HDTD/ |
Citation
From within R, enter citation("HDTD"):
Anestis Touloumis, John C. Marioni, Simon Tavar\'{e}. HDTD: Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD). doi:10.18129/B9.bioc.HDTD, R package version 1.47.0, https://bioconductor.org/packages/HDTD.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | HDTD_1.47.0.tar.gz |
| Windows binary (x86_64) | HDTD_1.47.0.zip |
| macOS binary (arm64) | HDTD_1.47.0.tgz |
| macOS binary (x86_64) | HDTD_1.47.0.tgz |