HIPPO
This is the development version of HIPPO; for the stable release version, see HIPPO.
All Bioconductor versions of HIPPO
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11
Heterogeneity-Induced Pre-Processing tOol
Bioconductor version: 3.24 · Package version: 1.25.0
For scRNA-seq data, it selects features and clusters the cells simultaneously for single-cell UMI data. It has a novel feature selection method using the zero inflation instead of gene variance, and computationally faster than other existing methods since it only relies on PCA+Kmeans rather than graph-clustering or consensus clustering.
Author: Tae Kim [aut, cre], Mengjie Chen [aut]
Maintainer: Tae Kim <tk382 at uchicago.edu>
Citation
From within R, enter citation("HIPPO"):
Tae Kim, Mengjie Chen. HIPPO: Heterogeneity-Induced Pre-Processing tOol. doi:10.18129/B9.bioc.HIPPO, R package version 1.25.0, https://bioconductor.org/packages/HIPPO.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("HIPPO")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.25.0 |
| License | GPL (>=2) |
| URL | https://github.com/tk382/HIPPO |
| Bug Reports | https://github.com/tk382/HIPPO/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.11 (R-4.0) (6 years) |
| Downloads rank | 1925 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Clustering, DifferentialExpression, GeneExpression, Sequencing, SingleCell, Software |
| Package Short Url | https://bioconductor.org/packages/HIPPO/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HIPPO")| Feature Selection and Hierarchical Clustering of cells in Zhengmix4eq | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | HIPPO_1.25.0.tar.gz |
| Windows binary (x86_64) | HIPPO_1.25.0.zip |
| macOS binary (arm64) | HIPPO_1.25.0.tgz |
| macOS binary (x86_64) | HIPPO_1.25.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/HIPPO |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HIPPO |
| Package Downloads Report | Download Stats |