DOI: 10.18129/B9.bioc.HelloRanges    

This is the development version of HelloRanges; for the stable release version, see HelloRanges.

Introduce *Ranges to bedtools users

Bioconductor version: Development (3.7)

Translates bedtools command-line invocations to R code calling functions from the Bioconductor *Ranges infrastructure. This is intended to educate novice Bioconductor users and to compare the syntax and semantics of the two frameworks.

Author: Michael Lawrence

Maintainer: Michael Lawrence <michafla at gene.com>

Citation (from within R, enter citation("HelloRanges")):


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PDF R Script HelloRanges Tutorial
PDF   Reference Manual
Text   NEWS


biocViews Annotation, Coverage, DataImport, GenomeAnnotation, SequenceMatching, Sequencing, Software, VariantAnnotation
Version 1.5.0
In Bioconductor since BioC 3.4 (R-3.3) (1.5 years)
License GPL (>= 2)
Depends methods, BiocGenerics, S4Vectors(>= 0.11.6), IRanges(>= 2.11.8), GenomicRanges(>= 1.29.6), Biostrings(>= 2.41.3), BSgenome, GenomicFeatures, VariantAnnotation(>= 1.19.3), Rsamtools, GenomicAlignments, rtracklayer(>= 1.33.8), GenomeInfoDb, SummarizedExperiment
Imports docopt, stats, tools, utils
Suggests HelloRangesData, BiocStyle
Depends On Me
Imports Me
Suggests Me
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Source Package HelloRanges_1.5.0.tar.gz
Windows Binary HelloRanges_1.5.0.zip
Mac OS X 10.11 (El Capitan) HelloRanges_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HelloRanges
Package Short Url http://bioconductor.org/packages/HelloRanges/
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