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IMMAN

Interlog protein network reconstruction by Mapping and Mining ANalysis

Bioconductor version: 3.24 · Package version: 1.33.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

Reconstructing Interlog Protein Network (IPN) integrated from several Protein protein Interaction Networks (PPINs). Using this package, overlaying different PPINs to mine conserved common networks between diverse species will be applicable.

DOI: 10.18129/B9.bioc.IMMAN

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IMMAN")

Details

MaintainerMinoo Ashtiani <ashtiani.minoo@gmail.com>
AuthorMinoo Ashtiani, Payman Nickchi, Abdollah Safari, Mehdi Mirzaie, Mohieddin Jafari
LicenseArtistic-2.0
Source branchdevel
Build report Bioconductor build system, r-universe
biocViewsAlignment, GraphAndNetwork, Network, Proteomics, SequenceMatching, Software, SystemsBiology
Package Short Url https://bioconductor.org/packages/IMMAN/

Citation

From within R, enter citation("IMMAN"):

Minoo Ashtiani, Payman Nickchi, Abdollah Safari, Mehdi Mirzaie, Mohieddin Jafari. IMMAN: Interlog protein network reconstruction by Mapping and Mining ANalysis. doi:10.18129/B9.bioc.IMMAN, R package version 1.33.0, https://bioconductor.org/packages/IMMAN.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageIMMAN_1.33.0.tar.gz
Windows binary (x86_64)IMMAN_1.33.0.zip
macOS binary (arm64)IMMAN_1.33.0.tgz
macOS binary (x86_64)IMMAN_1.33.0.tgz
Dependencies

Imports: STRINGdb, pwalign, igraph, graphics, utils, seqinr

Suggests: knitr, rmarkdown, testthat