IntramiRExploreR
Predicting Targets for Drosophila Intragenic miRNAs
Bioconductor version: 3.24 · Package version: 1.35.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IntramiRExploreR")Details
| Maintainer | Surajit Bhattacharya <sbhattach2@childrensnational.org> |
| Author | Surajit Bhattacharya and Daniel Cox |
| License | GPL-2 |
| URL | https://github.com/VilainLab/IntramiRExploreR |
| Bug Reports | https://github.com/VilainLab/IntramiRExploreR |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, GenePrediction, GeneTarget, Microarray, Software, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/IntramiRExploreR/ |
Citation
From within R, enter citation("IntramiRExploreR"):
Surajit Bhattacharya and Daniel Cox. IntramiRExploreR: Predicting Targets for Drosophila Intragenic miRNAs. doi:10.18129/B9.bioc.IntramiRExploreR, R package version 1.35.0, https://bioconductor.org/packages/IntramiRExploreR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | IntramiRExploreR_1.35.0.tar.gz |
| Windows binary (x86_64) | IntramiRExploreR_1.35.0.zip |
| macOS binary (arm64) | IntramiRExploreR_1.35.0.tgz |
| macOS binary (x86_64) | IntramiRExploreR_1.35.0.tgz |
Dependencies
Depends: R (>= 3.4)
Imports: igraph (>= 1.0.1), FGNet (>= 3.0.7), knitr (>= 1.12.3), stats, utils, grDevices, graphics
Suggests: gProfileR, topGO, org.Dm.eg.db, rmarkdown, testthat