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MCbiclust

Massive correlating biclusters for gene expression data and associated methods

Bioconductor version: 3.24 · Package version: 1.37.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

Custom made algorithm and associated methods for finding, visualising and analysing biclusters in large gene expression data sets. Algorithm is based on with a supplied gene set of size n, finding the maximum strength correlation matrix containing m samples from the data set.

DOI: 10.18129/B9.bioc.MCbiclust

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MCbiclust")

Details

MaintainerRobert Bentham <robert.bentham.11@ucl.ac.uk>
AuthorRobert Bentham
LicenseGPL-2
Source branchdevel
Build report Bioconductor build system, r-universe
biocViewsClustering, GeneExpression, ImmunoOncology, Microarray, RNASeq, Software, StatisticalMethod
Package Short Url https://bioconductor.org/packages/MCbiclust/

Citation

From within R, enter citation("MCbiclust"):

Robert Bentham. MCbiclust: Massive correlating biclusters for gene expression data and associated methods. doi:10.18129/B9.bioc.MCbiclust, R package version 1.37.0, https://bioconductor.org/packages/MCbiclust.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageMCbiclust_1.37.0.tar.gz
Windows binary (x86_64)MCbiclust_1.37.0.zip
macOS binary (arm64)MCbiclust_1.37.0.tgz
macOS binary (x86_64)MCbiclust_1.37.0.tgz
Dependencies

Depends: R (>= 3.4)

Imports: BiocParallel, graphics, utils, stats, AnnotationDbi, GO.db, org.Hs.eg.db, GGally, ggplot2, scales, cluster, WGCNA

Suggests: gplots, knitr, rmarkdown, BiocStyle, gProfileR, MASS, dplyr, pander, devtools, testthat, GSVA