MEAL
Perform methylation analysis
Bioconductor version: 3.24 · Package version: 1.43.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MEAL")Details
| Maintainer | Xavier Escribà Montagut <xavier.escriba@isglobal.org> |
| Author | Carlos Ruiz-Arenas [aut, cre], Juan R. Gonzalez [aut] |
| License | Artistic-2.0 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DNAMethylation, Microarray, Software, WholeGenome |
| Package Short Url | https://bioconductor.org/packages/MEAL/ |
Citation
From within R, enter citation("MEAL"):
Carlos Ruiz-Arenas, Juan R. Gonzalez. MEAL: Perform methylation analysis. doi:10.18129/B9.bioc.MEAL, R package version 1.43.0, https://bioconductor.org/packages/MEAL.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | MEAL_1.43.0.tar.gz |
| Windows binary (x86_64) | MEAL_1.43.0.zip |
| macOS binary (arm64) | MEAL_1.43.0.tgz |
| macOS binary (x86_64) | MEAL_1.43.0.tgz |
Dependencies
Depends: R (>= 3.6.0), Biobase, MultiDataSet
Imports: GenomicRanges, limma, vegan, BiocGenerics, minfi, IRanges, S4Vectors, methods, parallel, ggplot2 (>= 2.0.0), permute, Gviz, missMethyl, isva, SummarizedExperiment, SmartSVA, graphics, stats, utils, matrixStats
Suggests: testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData, BiocStyle, rmarkdown, brgedata