MSTree
MSTree plotting minimum spanning tree directly from the output of ChewBBACA pipeline
Bioconductor version: 3.24 · Package version: 0.99.6
This package is used to generate a graph object from the output of chewBBACA pipeline (https://chewbbaca.readthedocs.io/en/latest/). Then, the generated graph object can be used to make a minimum spanning tree (MST). The minimum spanning tree can be customized using all the available arguments. This package consists of two functions: one to build the graph and another one for plotting.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSTree")Details
| Maintainer | Abdullah El-Kurdi <ak161@aub.edu.lb> |
| Author | Abdullah El-Kurdi [aut, cre] (ORCID: <https://orcid.org/0000-0002-8321-4025>) |
| License | Artistic-2.0 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Clustering, ComparativeGenomics, GenomicVariation, Software |
| Package Short Url | https://bioconductor.org/packages/MSTree/ |
Citation
From within R, enter citation("MSTree"):
Abdullah El-Kurdi. MSTree: MSTree plotting minimum spanning tree directly from the output of ChewBBACA pipeline. doi:10.18129/B9.bioc.MSTree, R package version 0.99.6, https://bioconductor.org/packages/MSTree.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MSTree_0.99.6.tar.gz |
| macOS binary (arm64) | MSTree_0.99.6.tgz |
| macOS binary (x86_64) | MSTree_0.99.6.tgz |
Dependencies
Imports: igraph, ggraph, ggplot2, utils, methods, NetPathMiner
Suggests: RUnit, testthat, BiocGenerics, BiocStyle, knitr, rmarkdown