MSstatsTMT

DOI: 10.18129/B9.bioc.MSstatsTMT    

This is the development version of MSstatsTMT; to use it, please install the devel version of Bioconductor.

Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

Bioconductor version: Development (3.10)

Tools for protein significance analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling.

Author: Ting Huang [aut, cre], Meena Choi [aut], Sicheng Hao [aut], Olga Vitek [aut]

Maintainer: Ting Huang <thuang0703 at gmail.com>

Citation (from within R, enter citation("MSstatsTMT")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MSstatsTMT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsTMT")

 

HTML R Script MSstatsTMT User Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 1.3.2
In Bioconductor since BioC 3.8 (R-3.5) (1 year)
License Artistic-2.0
Depends R (>= 3.6)
Imports limma, lme4, dplyr, tidyr, nlme, statmod, reshape2, data.table, matrixStats, stats, utils, ggplot2, grDevices, graphics, MSstats
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL http://msstats.org/msstatstmt/
BugReports https://groups.google.com/forum/#!forum/msstats
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsTMT_1.3.2.tar.gz
Windows Binary MSstatsTMT_1.3.2.zip
Mac OS X 10.11 (El Capitan) MSstatsTMT_1.3.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsTMT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsTMT
Package Short Url https://bioconductor.org/packages/MSstatsTMT/
Package Downloads Report Download Stats

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