MetaboSignal
This is the development version of MetaboSignal; for the stable release version, see MetaboSignal.
All Bioconductor versions of MetaboSignal
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
Bioconductor version: 3.24 · Package version: 1.43.0
MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.
Author: Andrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Ana L. Neves, Maryam Anwar, Jeremy K. Nicholson, Marc-Emmanuel Dumas
Maintainer: Andrea Rodriguez-Martinez <andrea.rodriguez-martinez13 at imperial.ac.uk>, Rafael Ayala <rafaelayalahernandez at gmail.com>
Citation
From within R, enter citation("MetaboSignal"):
Andrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Ana L. Neves, Maryam Anwar, Jeremy K. Nicholson, Marc-Emmanuel Dumas. MetaboSignal: MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways. doi:10.18129/B9.bioc.MetaboSignal, R package version 1.43.0, https://bioconductor.org/packages/MetaboSignal.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("MetaboSignal")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.43.0 |
| License | GPL-3 |
| Last updated | 2026-07-11 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| Downloads rank | 664 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneSignaling, GeneTarget, GraphAndNetwork, KEGG, Network, Pathways, Reactome, Software |
| Package Short Url | https://bioconductor.org/packages/MetaboSignal/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaboSignal")| MetaboSignal | HTML | R Script |
| MetaboSignal 2: merging KEGG with additional interaction resources | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | MetaboSignal_1.43.0.tar.gz |
| Windows binary (x86_64) | MetaboSignal_1.43.0.zip |
| macOS binary (arm64) | MetaboSignal_1.43.0.tgz |
| macOS binary (x86_64) | MetaboSignal_1.43.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MetaboSignal |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaboSignal |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.3)
Imports: KEGGgraph, hpar, igraph, RCurl, KEGGREST, EnsDb.Hsapiens.v75, stats, graphics, utils, org.Hs.eg.db, biomaRt, AnnotationDbi, MWASTools, mygene
Suggests: RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown