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This is the development version of MethTargetedNGS; for the stable release version, see MethTargetedNGS.

Perform Methylation Analysis on Next Generation Sequencing Data

Bioconductor version: Development (3.20)

Perform step by step methylation analysis of Next Generation Sequencing data.

Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at>

Citation (from within R, enter citation("MethTargetedNGS")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Introduction to MethTargetedNGS PDF R Script
Reference Manual PDF


biocViews Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software
Version 1.37.0
In Bioconductor since BioC 3.1 (R-3.2) (9.5 years)
License Artistic-2.0
Depends R (>= 3.1.2), stringr, seqinr, gplots, Biostrings, pwalign
Imports utils, graphics, stats
System Requirements HMMER3
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Follow Installation instructions to use this package in your R session.

Source Package MethTargetedNGS_1.37.0.tar.gz
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macOS Binary (x86_64) MethTargetedNGS_1.37.0.tgz
macOS Binary (arm64) MethTargetedNGS_1.37.0.tgz
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Source Repository (Developer Access) git clone
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