MethTargetedNGS
Perform Methylation Analysis on Next Generation Sequencing Data
Bioconductor version: 3.24 · Package version: 1.45.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Perform step by step methylation analysis of Next Generation Sequencing data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MethTargetedNGS")Details
| Maintainer | Muhammad Ahmer Jamil <engr.ahmerjamil@gmail.com> |
| Author | Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri |
| License | Artistic-2.0 |
| System Requirements | HMMER3 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/MethTargetedNGS/ |
Citation
From within R, enter citation("MethTargetedNGS"):
Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri. MethTargetedNGS: Perform Methylation Analysis on Next Generation Sequencing Data. doi:10.18129/B9.bioc.MethTargetedNGS, R package version 1.45.0, https://bioconductor.org/packages/MethTargetedNGS.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MethTargetedNGS_1.45.0.tar.gz |
| Windows binary (x86_64) | MethTargetedNGS_1.45.0.zip |
| macOS binary (arm64) | MethTargetedNGS_1.45.0.tgz |
| macOS binary (x86_64) | MethTargetedNGS_1.45.0.tgz |
Dependencies
Depends: R (>= 3.1.2), stringr, seqinr, gplots, Biostrings, pwalign
Imports: utils, graphics, stats