MiRaGE
This is the development version of MiRaGE; for the stable release version, see MiRaGE.
MiRNA Ranking by Gene Expression
Bioconductor version: Development (3.20)
The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.
Author: Y-h. Taguchi <tag at granular.com>
Maintainer: Y-h. Taguchi <tag at granular.com>
Citation (from within R, enter
citation("MiRaGE")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MiRaGE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MiRaGE")
How to use MiRaGE Package | R Script | |
Reference Manual |
Details
biocViews | GeneExpression, ImmunoOncology, Microarray, RNASeq, SAGE, Sequencing, Software |
Version | 1.47.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (12 years) |
License | GPL |
Depends | R (>= 3.1.0), Biobase(>= 2.23.3) |
Imports | BiocGenerics, S4Vectors, AnnotationDbi, BiocManager |
System Requirements | |
URL |
See More
Suggests | seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MiRaGE_1.47.0.tar.gz |
Windows Binary | MiRaGE_1.47.0.zip |
macOS Binary (x86_64) | MiRaGE_1.47.0.tgz |
macOS Binary (arm64) | MiRaGE_1.47.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MiRaGE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MiRaGE |
Bioc Package Browser | https://code.bioconductor.org/browse/MiRaGE/ |
Package Short Url | https://bioconductor.org/packages/MiRaGE/ |
Package Downloads Report | Download Stats |