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This is the development version of MiRaGE; for the stable release version, see MiRaGE.

MiRNA Ranking by Gene Expression

Bioconductor version: Development (3.20)

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at>

Maintainer: Y-h. Taguchi <tag at>

Citation (from within R, enter citation("MiRaGE")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

How to use MiRaGE Package PDF R Script
Reference Manual PDF


biocViews GeneExpression, ImmunoOncology, Microarray, RNASeq, SAGE, Sequencing, Software
Version 1.47.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL
Depends R (>= 3.1.0), Biobase(>= 2.23.3)
Imports BiocGenerics, S4Vectors, AnnotationDbi, BiocManager
System Requirements
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Suggests seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData
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Follow Installation instructions to use this package in your R session.

Source Package MiRaGE_1.47.0.tar.gz
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macOS Binary (x86_64) MiRaGE_1.47.0.tgz
macOS Binary (arm64) MiRaGE_1.47.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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