MsBackendMassIVE
Retrieve Mass Spectrometry Data from MassIVE
Bioconductor version: 3.24 · Package version: 0.99.2
MassIVE is one of the main public repositories for storage of metabolomics experiments. The MsBackendMassIVE package provides functionality to retrieve and represent mass spectrometry (MS) data from MassIVE. Data files are downloaded and cached locally avoiding repetitive downloads. MS data from metabolomics experiments can thus be directly and seamlessly integrated into R-based analysis workflows with the Spectra and MsBackendMassIVE package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendMassIVE")Details
| Maintainer | Gabriele Tomè <gabriele.tome@eurac.edu> |
| Author | Gabriele Tomè [aut, cre] (ORCID: <https://orcid.org/0000-0002-3976-6068>, fnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.), Philippine Louail [aut] (ORCID: <https://orcid.org/0009-0007-5429-6846>), Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>) |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/MsBackendMassIVE |
| Bug Reports | https://github.com/RforMassSpectrometry/MsBackendMassIVE/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/MsBackendMassIVE/ |
Citation
From within R, enter citation("MsBackendMassIVE"):
Gabriele Tomè, Philippine Louail, Johannes Rainer. MsBackendMassIVE: Retrieve Mass Spectrometry Data from MassIVE. doi:10.18129/B9.bioc.MsBackendMassIVE, R package version 0.99.2, https://bioconductor.org/packages/MsBackendMassIVE.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MsBackendMassIVE_0.99.2.tar.gz |
| Windows binary (x86_64) | MsBackendMassIVE_0.99.2.zip |
| macOS binary (arm64) | MsBackendMassIVE_0.99.2.tgz |
| macOS binary (x86_64) | MsBackendMassIVE_0.99.2.tgz |
Dependencies
Depends: R (>= 4.2.0), Spectra (>= 1.15.12)
Imports: httr2, xml2, ProtGenerics, BiocFileCache, S4Vectors, methods, MsCoreUtils (>= 1.23.9), progress, jsonlite, rvest