NanoStringNCTools
This is the development version of NanoStringNCTools; for the stable release version, see NanoStringNCTools.
NanoString nCounter Tools
Bioconductor version: Development (3.24)
Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.
Author: Patrick Aboyoun [aut], Nicole Ortogero [aut], Maddy Griswold [cre], Zhi Yang [ctb]
Maintainer: Maddy Griswold <mgriswold at nanostring.com>
citation("NanoStringNCTools")):Patrick Aboyoun, Nicole Ortogero. NanoStringNCTools: NanoString nCounter Tools. doi:10.18129/B9.bioc.NanoStringNCTools, R package version 1.21.2, https://bioconductor.org/packages/NanoStringNCTools.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("NanoStringNCTools")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NanoStringNCTools")| Introduction to the NanoStringRCCSet Class | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CellBasedAssays, DataImport, GeneExpression, ProprietaryPlatforms, Proteomics, RNASeq, Software, Transcription, Transcriptomics, mRNAMicroarray |
| Version | 1.21.2 |
| In Bioconductor since | BioC 3.13 (R-4.1) (5.5 years) |
| License | MIT |
| Depends | R (>= 3.6), Biobase, S4Vectors, ggplot2 |
| Imports | BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes, grDevices, IRanges, methods, pheatmap, RColorBrewer, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf |
| Linking To | |
| Enhances | |
| Depends On Me | GeomxTools, GeoMxWorkflows |
| Imports Me | GeoDiff |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | NanoStringNCTools_1.21.2.tar.gz |
| Windows Binary (x86_64) | NanoStringNCTools_1.21.2.zip |
| macOS Binary (big-sur-x86_64) | NanoStringNCTools_1.21.2.tgz |
| macOS Binary (sonoma-arm64) | NanoStringNCTools_1.21.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/NanoStringNCTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NanoStringNCTools |
| Package Short Url | https://bioconductor.org/packages/NanoStringNCTools/ |
| Package Downloads Report | Download Stats |