NanoStringNCTools

This is the development version of NanoStringNCTools; for the stable release version, see NanoStringNCTools.

NanoString nCounter Tools

Bioconductor version: Development (3.19)

Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.

Author: Patrick Aboyoun [aut], Nicole Ortogero [aut], Maddy Griswold [cre], Zhi Yang [ctb]

Maintainer: Maddy Griswold <mgriswold at nanostring.com>

Citation (from within R, enter citation("NanoStringNCTools")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("NanoStringNCTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NanoStringNCTools")

Introduction to the NanoStringRCCSet Class	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellBasedAssays, DataImport, GeneExpression, ProprietaryPlatforms, Proteomics, RNASeq, Software, Transcription, Transcriptomics, mRNAMicroarray
Version	1.11.4
In Bioconductor since	BioC 3.13 (R-4.1) (3 years)
License	MIT
Depends	R (>= 3.6), Biobase, S4Vectors, ggplot2
Imports	BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes, grDevices, IRanges, methods, pheatmap, RColorBrewer, stats, utils
System Requirements
URL

Suggests	biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf
Linking To
Enhances
Depends On Me	GeomxTools, GeoMxWorkflows
Imports Me	GeoDiff
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	NanoStringNCTools_1.11.4.tar.gz
Windows Binary
macOS Binary (x86_64)	NanoStringNCTools_1.11.4.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/NanoStringNCTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/NanoStringNCTools
Bioc Package Browser	https://code.bioconductor.org/browse/NanoStringNCTools/
Package Short Url	https://bioconductor.org/packages/NanoStringNCTools/
Package Downloads Report	Download Stats