PeacoQC
This is the development version of PeacoQC; for the stable release version, see PeacoQC.
All Bioconductor versions of PeacoQC
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12
Peak-based selection of high quality cytometry data
Bioconductor version: 3.24 · Package version: 1.23.0
This is a package that includes pre-processing and quality control functions that can remove margin events, compensate and transform the data and that will use PeacoQCSignalStability for quality control. This last function will first detect peaks in each channel of the flowframe. It will remove anomalies based on the IsolationTree function and the MAD outlier detection method. This package can be used for both flow- and mass cytometry data.
Author: Annelies Emmaneel [aut, cre]
Maintainer: Annelies Emmaneel <annelies.emmaneel at hotmail.com>
Citation
From within R, enter citation("PeacoQC"):
Annelies Emmaneel. PeacoQC: Peak-based selection of high quality cytometry data. doi:10.18129/B9.bioc.PeacoQC, R package version 1.23.0, https://bioconductor.org/packages/PeacoQC.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("PeacoQC")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.23.0 |
| License | GPL (>=3) |
| URL | http://github.com/saeyslab/PeacoQC |
| Bug Reports | http://github.com/saeyslab/PeacoQC/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.12 (R-4.0) (5 years) |
| Downloads rank | 595 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | FlowCytometry, PeakDetection, Preprocessing, QualityControl, Software |
| Package Short Url | https://bioconductor.org/packages/PeacoQC/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PeacoQC")| PeacoQC | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | PeacoQC_1.23.0.tar.gz |
| Windows binary (x86_64) | PeacoQC_1.23.0.zip |
| macOS binary (arm64) | PeacoQC_1.23.0.tgz |
| macOS binary (x86_64) | PeacoQC_1.23.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PeacoQC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PeacoQC |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.0)
Imports: circlize, ComplexHeatmap, flowCore, flowWorkspace, ggplot2, grDevices, grid, gridExtra, methods, plyr, stats, utils
Reverse dependencies
Imports Me (1): CytoPipeline