R4RNA
An R package for RNA visualization and analysis
Bioconductor version: 3.24 · Package version: 1.41.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence and structure. Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and covariation, with numerical methods for computing statistics for each.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("R4RNA")Details
| Maintainer | Daniel Lai <jujubix@cs.ubc.ca> |
| Author | Daniel Lai, Irmtraud Meyer <irmtraud.meyer@cantab.net> |
| License | GPL-3 |
| URL | http://www.e-rna.org/r-chie/ |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Alignment, DataImport, DataRepresentation, MultipleComparison, MultipleSequenceAlignment, Preprocessing, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/R4RNA/ |
Citation
From within R, enter citation("R4RNA"):
Daniel Lai, Irmtraud Meyer. R4RNA: An R package for RNA visualization and analysis. doi:10.18129/B9.bioc.R4RNA, R package version 1.41.0, https://bioconductor.org/packages/R4RNA.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | R4RNA_1.41.0.tar.gz |
| Windows binary (x86_64) | R4RNA_1.41.0.zip |
| macOS binary (arm64) | R4RNA_1.41.0.tgz |
| macOS binary (x86_64) | R4RNA_1.41.0.tgz |
Dependencies
Depends: R (>= 3.2.0), Biostrings (>= 2.38.0)