RBPEqBind
This is the development version of RBPEqBind; to use it, please install the devel version of Bioconductor.
RNA-Binding Protein Competitive Binding Simulation
Bioconductor version: 3.24 · Package version: 0.99.4
Simulates competitive binding of N RBPs to RNA sequences using an equilibrium binding model. Supports single sequences, concentration grids, and transcriptome-wide analysis. Designed for Bioconductor.
Author: Soon Yi [aut, cre] 
, National Institutes of Health [fnd] (T32 GM152319)
Maintainer: Soon Yi <cu.soonyi at gmail.com>
Citation
From within R, enter citation("RBPEqBind"):
Soon Yi. RBPEqBind: RNA-Binding Protein Competitive Binding Simulation. doi:10.18129/B9.bioc.RBPEqBind, R package version 0.99.4, https://bioconductor.org/packages/RBPEqBind.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("RBPEqBind")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 0.99.4 |
| License | GPL-3 |
| URL | https://github.com/S00NYI/RBPEqBind |
| Bug Reports | https://github.com/S00NYI/RBPEqBind/issues |
| Last updated | 2026-08-25 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| Downloads rank | 2449 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | FunctionalGenomics, GeneRegulation, MathematicalBiology, Software, SystemsBiology, Transcriptomics, Visualization |
| Package Short Url | https://bioconductor.org/packages/RBPEqBind/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RBPEqBind")| Introduction to RBPEqBind | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | RBPEqBind_0.99.4.tar.gz |
| Windows binary (x86_64) | RBPEqBind_0.99.4.zip |
| macOS binary (arm64) | RBPEqBind_0.99.4.tgz |
| macOS binary (x86_64) | RBPEqBind_0.99.4.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RBPEqBind |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RBPEqBind |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.5.0)
Imports: Biostrings, data.table, future.apply, GenomicRanges, ggplot2, IRanges, jsonlite, rtracklayer, S4Vectors, stats, SummarizedExperiment, utils
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, progressr, BiocStyle, future, vdiffr