RaggedExperiment

DOI: 10.18129/B9.bioc.RaggedExperiment    

This is the development version of RaggedExperiment; for the stable release version, see RaggedExperiment.

Representation of Sparse Experiments and Assays Across Samples

Bioconductor version: Development (3.9)

This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns.

Author: Martin Morgan [aut, cre], Marcel Ramos [aut]

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Citation (from within R, enter citation("RaggedExperiment")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RaggedExperiment", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RaggedExperiment")

 

HTML R Script RaggedExperiment
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.7.0
In Bioconductor since BioC 3.5 (R-3.4) (1.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), GenomicRanges
Imports BiocGenerics, GenomeInfoDb, IRanges, methods, S4Vectors, stats, SummarizedExperiment
LinkingTo
Suggests BiocStyle, knitr, testthat, MultiAssayExperiment
SystemRequirements
Enhances
URL
BugReports https://github.com/Bioconductor/RaggedExperiment/issues
Depends On Me TxRegInfra
Imports Me omicsPrint, RTCGAToolbox, TCGAutils
Suggests Me MultiAssayExperiment, MultiDataSet
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RaggedExperiment_1.7.0.tar.gz
Windows Binary RaggedExperiment_1.7.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) RaggedExperiment_1.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RaggedExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RaggedExperiment
Package Short Url http://bioconductor.org/packages/RaggedExperiment/
Package Downloads Report Download Stats

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