SEtools
This is the development version of SEtools; for the stable release version, see SEtools.
All Bioconductor versions of SEtools
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10
SEtools: tools for working with SummarizedExperiment
Bioconductor version: 3.24 · Package version: 1.27.0
This includes a set of convenience functions for working with the SummarizedExperiment class. Note that plotting functions historically in this package have been moved to the sechm package (see vignette for details).
Author: Pierre-Luc Germain [cre, aut] 
Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>
Citation
From within R, enter citation("SEtools"):
Pierre-Luc Germain. SEtools: SEtools: tools for working with SummarizedExperiment. doi:10.18129/B9.bioc.SEtools, R package version 1.27.0, https://bioconductor.org/packages/SEtools.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("SEtools")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.27.0 |
| License | GPL |
| Bug Reports | https://github.com/plger/SEtools |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| Downloads rank | 1486 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, Software |
| Package Short Url | https://bioconductor.org/packages/SEtools/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SEtools")| SEtools | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | SEtools_1.27.0.tar.gz |
| Windows binary (x86_64) | SEtools_1.27.0.zip |
| macOS binary (arm64) | SEtools_1.27.0.tgz |
| macOS binary (x86_64) | SEtools_1.27.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SEtools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SEtools |
| Package Downloads Report | Download Stats |