SIMAT
GC-SIM-MS data processing and alaysis tool
Bioconductor version: 3.24 · Package version: 1.45.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SIMAT")Details
| Maintainer | M. R. Nezami Ranjbar <nranjbar@vt.edu> |
| Author | M. R. Nezami Ranjbar <nranjbar@vt.edu> |
| License | GPL-2 |
| URL | http://omics.georgetown.edu/SIMAT.html |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | ImmunoOncology, MassSpectrometry, Metabolomics, Software |
| Package Short Url | https://bioconductor.org/packages/SIMAT/ |
Citation
From within R, enter citation("SIMAT"):
M. R. Nezami Ranjbar. SIMAT: GC-SIM-MS data processing and alaysis tool. doi:10.18129/B9.bioc.SIMAT, R package version 1.45.0, https://bioconductor.org/packages/SIMAT.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | SIMAT_1.45.0.tar.gz |
| Windows binary (x86_64) | SIMAT_1.45.0.zip |
| macOS binary (arm64) | SIMAT_1.45.0.tgz |
| macOS binary (x86_64) | SIMAT_1.45.0.tgz |
Dependencies
Depends: R (>= 3.5.0), Rcpp (>= 0.11.3)
Imports: mzR, ggplot2, grid, reshape2, grDevices, stats, utils
Suggests: RUnit, BiocGenerics