SUITOR

DOI: 10.18129/B9.bioc.SUITOR    

This is the development version of SUITOR; for the stable release version, see SUITOR.

Selecting the number of mutational signatures through cross-validation

Bioconductor version: Development (3.17)

An unsupervised cross-validation method to select the optimal number of mutational signatures. A data set of mutational counts is split into training and validation data.Signatures are estimated in the training data and then used to predict the mutations in the validation data.

Author: DongHyuk Lee [aut], Bin Zhu [aut], Bill Wheeler [cre]

Maintainer: Bill Wheeler <wheelerb at imsweb.com>

Citation (from within R, enter citation("SUITOR")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SUITOR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SUITOR")

 

PDF R Script SUITOR: selecting the number of mutational signatures
PDF   Reference Manual
Text   NEWS

Details

biocViews Genetics, Software, SomaticMutation
Version 1.1.0
In Bioconductor since BioC 3.16 (R-4.2) (< 6 months)
License GPL-2
Depends R (>= 4.2.0)
Imports stats, utils, graphics, ggplot2, BiocParallel
LinkingTo
Suggests devtools, MutationalPatterns, RUnit, BiocManager, BiocGenerics, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports https://github.com/wheelerb/SUITOR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SUITOR_1.1.0.tar.gz
Windows Binary SUITOR_1.1.0.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/SUITOR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SUITOR
Package Short Url https://bioconductor.org/packages/SUITOR/
Package Downloads Report Download Stats

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