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ScaledMatrix

This is the development version of ScaledMatrix; for the stable release version, see ScaledMatrix.

Creating a DelayedMatrix of Scaled and Centered Values


Bioconductor version: Development (3.19)

Provides delayed computation of a matrix of scaled and centered values. The result is equivalent to using the scale() function but avoids explicit realization of a dense matrix during block processing. This permits greater efficiency in common operations, most notably matrix multiplication.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("ScaledMatrix")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ScaledMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ScaledMatrix")
Using the ScaledMatrix HTML R Script
Reference Manual PDF

Details

biocViews DataRepresentation, Software
Version 1.11.0
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License GPL-3
Depends
Imports methods, Matrix, S4Vectors, DelayedArray
System Requirements
URL https://github.com/LTLA/ScaledMatrix
Bug Reports https://github.com/LTLA/ScaledMatrix/issues
See More
Suggests testthat, BiocStyle, knitr, rmarkdown, BiocSingular, DelayedMatrixStats
Linking To
Enhances
Depends On Me
Imports Me batchelor, BiocSingular, mumosa, scPCA
Suggests Me scran
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ScaledMatrix_1.11.0.tar.gz
Windows Binary ScaledMatrix_1.11.0.zip
macOS Binary (x86_64) ScaledMatrix_1.11.0.tgz
macOS Binary (arm64) ScaledMatrix_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ScaledMatrix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ScaledMatrix
Bioc Package Browser https://code.bioconductor.org/browse/ScaledMatrix/
Package Short Url https://bioconductor.org/packages/ScaledMatrix/
Package Downloads Report Download Stats