SubCellBarCode
This is the development version of SubCellBarCode; for the stable release version, see SubCellBarCode.
SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome
Bioconductor version: Development (3.20)
Mass-Spectrometry based spatial proteomics have enabled the proteome-wide mapping of protein subcellular localization (Orre et al. 2019, Molecular Cell). SubCellBarCode R package robustly classifies proteins into corresponding subcellular localization.
Author: Taner Arslan
Maintainer: Taner Arslan <taner.arslan at ki.se>
citation("SubCellBarCode")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SubCellBarCode")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SubCellBarCode")
SubCellBarCode R Markdown vignettes | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Classification, MassSpectrometry, Proteomics, Software |
Version | 1.21.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
License | GPL-2 |
Depends | R (>= 3.6) |
Imports | Rtsne, scatterplot3d, caret, e1071, ggplot2, gridExtra, networkD3, ggrepel, graphics, stats, org.Hs.eg.db, AnnotationDbi |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SubCellBarCode_1.21.0.tar.gz |
Windows Binary | SubCellBarCode_1.21.0.zip |
macOS Binary (x86_64) | SubCellBarCode_1.21.0.tgz |
macOS Binary (arm64) | SubCellBarCode_1.21.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SubCellBarCode |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SubCellBarCode |
Bioc Package Browser | https://code.bioconductor.org/browse/SubCellBarCode/ |
Package Short Url | https://bioconductor.org/packages/SubCellBarCode/ |
Package Downloads Report | Download Stats |