SwarnSeq
This is the development version of SwarnSeq; to use it, please install the devel version of Bioconductor.
Differential Expression and Differential Zero Inflation analysis
Bioconductor version: 3.24 · Package version: 0.99.5
This R package performs differential expression and differential zero inflation analysis of single-cell RNA-seq (scRNA-seq) UMI counts data through adjusting cell capture efficiency.
Author: Samarendra Das [aut, cre] 
, Satyajit Chhatoi [aut], Indian Council of Agricultural Research [fnd], Science and Engineering Research Board [fnd] (Core Research Grant (CRG004960))
Maintainer: Samarendra Das <samarendra.das at icar.org.in>
Citation
From within R, enter citation("SwarnSeq"):
Samarendra Das, Satyajit Chhatoi. SwarnSeq: Differential Expression and Differential Zero Inflation analysis. doi:10.18129/B9.bioc.SwarnSeq, R package version 0.99.5, https://bioconductor.org/packages/SwarnSeq.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("SwarnSeq")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 0.99.5 |
| License | GPL-3 |
| URL | https://github.com/nifmd-bbf/SwarnSeq |
| Bug Reports | https://github.com/nifmd-bbf/SwarnSeq/issues |
| Last updated | 2026-07-22 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| Downloads rank | 2430 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, GeneExpression, RNASeq, SingleCell, Software, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/SwarnSeq/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SwarnSeq")| SwarnSeq | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | SwarnSeq_0.99.5.tar.gz |
| Windows binary (x86_64) | SwarnSeq_0.99.5.zip |
| macOS binary (arm64) | SwarnSeq_0.99.5.tgz |
| macOS binary (x86_64) | SwarnSeq_0.99.5.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SwarnSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SwarnSeq |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.5.0)
Imports: stats, MASS, edgeR, SingleCellExperiment, SummarizedExperiment
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle