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This is the development version of TFutils; for the stable release version, see TFutils.


Bioconductor version: Development (3.20)

This package helps users to work with TF metadata from various sources. Significant catalogs of TFs and classifications thereof are made available. Tools for working with motif scans are also provided.

Author: Vincent Carey [aut, cre], Shweta Gopaulakrishnan [aut]

Maintainer: Vincent Carey <stvjc at>

Citation (from within R, enter citation("TFutils")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

A note on fimo16 HTML R Script
TFutils -- representing TFBS and TF target sets HTML R Script
Reference Manual PDF


biocViews Software, Transcriptomics
Version 1.25.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports methods, dplyr, magrittr, miniUI, shiny, Rsamtools, GSEABase, rjson, BiocFileCache, DT, httr, readxl, AnnotationDbi,, utils
System Requirements
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Suggests knitr, data.table, testthat, AnnotationFilter, Biobase, GenomicFeatures, GenomicRanges, Gviz, IRanges, S4Vectors, EnsDb.Hsapiens.v75, BiocParallel, BiocStyle, GO.db, GenomicFiles, GenomeInfoDb, SummarizedExperiment, UpSetR, ggplot2, png, gwascat, MotifDb, motifStack, RColorBrewer, rmarkdown
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Follow Installation instructions to use this package in your R session.

Source Package TFutils_1.25.0.tar.gz
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macOS Binary (x86_64) TFutils_1.25.0.tgz
macOS Binary (arm64) TFutils_1.25.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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