TPP
This is the development version of TPP; for the stable release version, see TPP.
All Bioconductor versions of TPP
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1
Analyze thermal proteome profiling (TPP) experiments
Bioconductor version: 3.24 · Package version: 3.41.4
Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).
Author: Dorothee Childs [cre, aut], Nils Kurzawa [aut], Holger Franken [aut], Carola Doce [aut], Mikhail Savitski [aut], Wolfgang Huber [aut]
Maintainer: Dorothee Childs <d.childs at posteo.de>
DOI: 10.18129/B9.bioc.TPP
Citation
From within R, enter citation("TPP"):
Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski, Wolfgang Huber. TPP: Analyze thermal proteome profiling (TPP) experiments. doi:10.18129/B9.bioc.TPP, R package version 3.41.4, https://bioconductor.org/packages/TPP.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("TPP")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 3.41.4 |
| License | Artistic-2.0 |
| Last updated | 2026-09-17 |
| In Bioconductor since | BioC 3.1 (R-3.2) (11 years) |
| Downloads rank | 477 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | ImmunoOncology, MassSpectrometry, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/TPP/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TPP")| TPP_introduction_1D | R Script | |
| TPP_introduction_2D | R Script | |
| TPP_introduction_NPARC | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | TPP_3.41.4.tar.gz |
| Windows binary (x86_64) | TPP_3.41.4.zip |
| macOS binary (arm64) | TPP_3.41.4.tgz |
| macOS binary (x86_64) | TPP_3.41.4.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TPP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TPP |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.4), Biobase, dplyr, magrittr, tidyr
Imports: data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rlang, rmarkdown, splines, stats, stringr, tibble, utils, VennDiagram, VGAM
Reverse dependencies
Suggests Me (1): Rtpca