TRESS
Toolbox for mRNA epigenetics sequencing analysis
Bioconductor version: 3.24 · Package version: 1.19.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package is devoted to analyzing MeRIP-seq data. Current functionalities include 1. detect transcriptome wide m6A methylation regions 2. detect transcriptome wide differential m6A methylation regions.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TRESS")Details
| Maintainer | Zhenxing Guo <guozhenxing@cuhk.edu.cn> |
| Author | Zhenxing Guo [aut, cre], Hao Wu [ctb] |
| License | GPL-3 + file LICENSE |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialMethylation, Epigenetics, PeakDetection, RNASeq, Software |
| Package Short Url | https://bioconductor.org/packages/TRESS/ |
Citation
From within R, enter citation("TRESS"):
Zhenxing Guo. TRESS: Toolbox for mRNA epigenetics sequencing analysis. doi:10.18129/B9.bioc.TRESS, R package version 1.19.0, https://bioconductor.org/packages/TRESS.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | TRESS_1.19.0.tar.gz |
| Windows binary (x86_64) | TRESS_1.19.0.zip |
| macOS binary (arm64) | TRESS_1.19.0.tgz |
| macOS binary (x86_64) | TRESS_1.19.0.tgz |
Dependencies
Depends: R (>= 4.1.0), parallel, S4Vectors
Imports: utils, rtracklayer, Matrix, matrixStats, stats, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi
Reverse dependencies
Imports Me (1): magpie