adSplit
This is the development version of adSplit; for the stable release version, see adSplit.
Annotation-Driven Clustering
Bioconductor version: Development (3.20)
This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.
Author: Claudio Lottaz, Joern Toedling
Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>
citation("adSplit")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("adSplit")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("adSplit")
Annotation-Driven Clustering | R Script | |
Reference Manual |
Details
biocViews | Clustering, Microarray, Software |
Version | 1.75.0 |
In Bioconductor since | BioC 1.8 (R-2.3) (18.5 years) |
License | GPL (>= 2) |
Depends | R (>= 2.1.0), methods (>= 2.1.0) |
Imports | AnnotationDbi, Biobase(>= 1.5.12), cluster (>= 1.9.1), GO.db(>= 1.8.1), graphics, grDevices, KEGGREST(>= 1.30.1), multtest(>= 1.6.0), stats (>= 2.1.0) |
System Requirements | |
URL | http://compdiag.molgen.mpg.de/software/adSplit.shtml |
See More
Suggests | golubEsets(>= 1.0), vsn(>= 1.5.0), hu6800.db(>= 1.8.1) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | adSplit_1.75.0.tar.gz |
Windows Binary | adSplit_1.75.0.zip (64-bit only) |
macOS Binary (x86_64) | adSplit_1.75.0.tgz |
macOS Binary (arm64) | adSplit_1.75.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/adSplit |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/adSplit |
Bioc Package Browser | https://code.bioconductor.org/browse/adSplit/ |
Package Short Url | https://bioconductor.org/packages/adSplit/ |
Package Downloads Report | Download Stats |