affyILM
Linear Model of background subtraction and the Langmuir isotherm
Bioconductor version: 3.24 · Package version: 1.65.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affyILM")Details
| Maintainer | Myriam Kroll and Fabrice Berger <fabrice.berger@gmail.com> |
| Author | K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon |
| License | GPL-3 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Package Short Url | https://bioconductor.org/packages/affyILM/ |
Citation
From within R, enter citation("affyILM"):
K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon. affyILM: Linear Model of background subtraction and the Langmuir isotherm. doi:10.18129/B9.bioc.affyILM, R package version 1.65.0, https://bioconductor.org/packages/affyILM.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | affyILM_1.65.0.tar.gz |
| Windows binary (x86_64) | affyILM_1.65.0.zip |
| macOS binary (arm64) | affyILM_1.65.0.tgz |
| macOS binary (x86_64) | affyILM_1.65.0.tgz |
Dependencies
Depends: R (>= 2.10.0), methods, gcrma
Imports: affxparser (>= 1.16.0), affy, graphics, Biobase
Suggests: AffymetrixDataTestFiles, hgfocusprobe