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This is the development version of alevinQC; for the stable release version, see alevinQC.

Generate QC Reports For Alevin Output

Bioconductor version: Development (3.19)

Generate QC reports summarizing the output from an alevin, alevin-fry, or simpleaf run. Reports can be generated as html or pdf files, or as shiny applications.

Author: Charlotte Soneson [aut, cre] , Avi Srivastava [aut], Rob Patro [aut], Dongze He [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("alevinQC")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

alevinQC HTML R Script
Reference Manual PDF


biocViews QualityControl, SingleCell, Software
Version 1.19.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports rmarkdown (>= 2.5), tools, methods, ggplot2 (>= 3.4.0), GGally, dplyr, rjson, shiny, shinydashboard, DT, stats, utils, tximport(>= 1.17.4), cowplot, rlang, Rcpp
System Requirements C++11
URL https://github.com/csoneson/alevinQC
Bug Reports https://github.com/csoneson/alevinQC/issues
See More
Suggests knitr, BiocStyle, testthat (>= 3.0.0), BiocManager
Linking To Rcpp
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alevinQC_1.19.0.tar.gz
Windows Binary alevinQC_1.19.0.zip (64-bit only)
macOS Binary (x86_64) alevinQC_1.19.0.tgz
macOS Binary (arm64) alevinQC_1.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/alevinQC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alevinQC
Bioc Package Browser https://code.bioconductor.org/browse/alevinQC/
Package Short Url https://bioconductor.org/packages/alevinQC/
Package Downloads Report Download Stats