arrayMvout
multivariate outlier detection for expression array QA
Bioconductor version: 3.24 · Package version: 1.71.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("arrayMvout")Details
| Maintainer | V. Carey <stvjc@channing.harvard.edu> |
| Author | Z. Gao, A. Asare, R. Wang, V. Carey |
| License | Artistic-2.0 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Infrastructure, Microarray, QualityControl, Software |
| Package Short Url | https://bioconductor.org/packages/arrayMvout/ |
Citation
From within R, enter citation("arrayMvout"):
Z. Gao, A. Asare, R. Wang, V. Carey. arrayMvout: multivariate outlier detection for expression array QA. doi:10.18129/B9.bioc.arrayMvout, R package version 1.71.0, https://bioconductor.org/packages/arrayMvout.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | arrayMvout_1.71.0.tar.gz |
| Windows binary (x86_64) | arrayMvout_1.71.0.zip |
| macOS binary (arm64) | arrayMvout_1.71.0.tgz |
| macOS binary (x86_64) | arrayMvout_1.71.0.tgz |
Dependencies
Depends: R (>= 2.6.0), tools, methods, utils, parody, Biobase, affy
Imports: mdqc, affyContam, lumi
Suggests: MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata, hgu133atagcdf