DOI: 10.18129/B9.bioc.arrayQualityMetrics    

This is the development version of arrayQualityMetrics; for the stable release version, see arrayQualityMetrics.

Quality metrics report for microarray data sets

Bioconductor version: Development (3.9)

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Mike Smith <mike.smith at>

Citation (from within R, enter citation("arrayQualityMetrics")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("arrayQualityMetrics", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output
PDF R Script Introduction: microarray quality assessment with arrayQualityMetrics
PDF   Reference Manual
Text   NEWS


biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel
Version 3.39.1
In Bioconductor since BioC 2.1 (R-2.6) (11.5 years)
License LGPL (>= 2)
Imports affy, affyPLM(>= 1.27.3), beadarray, Biobase, genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, utils, vsn(>= 3.23.3), XML, svglite
Suggests ALLMLL, CCl4, BiocStyle, knitr
Depends On Me maEndToEnd
Imports Me EGAD
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package arrayQualityMetrics_3.39.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone
Source Repository (Developer Access) git clone
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