basilisk
Freezing Python Dependencies Inside Bioconductor Packages
Bioconductor version: 3.24 · Package version: 1.25.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("basilisk")Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [aut, cre, cph], Vince Carey [ctb] |
| License | GPL-3 |
| Bug Reports | https://github.com/LTLA/basilisk/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/basilisk/ |
Citation
From within R, enter citation("basilisk"):
Aaron Lun. basilisk: Freezing Python Dependencies Inside Bioconductor Packages. doi:10.18129/B9.bioc.basilisk, R package version 1.25.0, https://bioconductor.org/packages/basilisk.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | basilisk_1.25.0.tar.gz |
| Windows binary (x86_64) | basilisk_1.25.0.zip |
| macOS binary (arm64) | basilisk_1.25.0.tgz |
| macOS binary (x86_64) | basilisk_1.25.0.tgz |
Reverse dependencies
Imports Me (30): BiocHail, BiocSklearn, cbpManager, cfTools, densvis, DNAcycP2, DOtools, FLAMES, HiCool, Ibex, immLynx, MACSr, MOFA2, OAtools, ontoProc, orthos, Pirat, Rcwl, recountmethylation, ReUseData, scifer, scPipe, SimBu, sketchR, snifter, spatialDE, StatescopeR, stPipe, velociraptor, zellkonverter