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biocthis

This is the development version of biocthis; for the stable release version, see biocthis.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

Automate package and project setup for Bioconductor packages


Bioconductor version: Development (3.24)

This package expands the usethis package with the goal of helping automate the process of creating R packages for Bioconductor or making them Bioconductor-friendly.

Author: Leonardo Collado-Torres [aut, cre] ORCID iD ORCID: 0000-0003-2140-308X , Marcel Ramos [ctb] ORCID iD ORCID: 0000-0002-3242-0582

Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>

Citation (from within R, enter citation("biocthis")):

Leonardo Collado-Torres. biocthis: Automate package and project setup for Bioconductor packages. doi:10.18129/B9.bioc.biocthis, R package version 1.23.0, https://bioconductor.org/packages/biocthis.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("biocthis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biocthis")
biocthis developer notes HTML R Script
Introduction to biocthis HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews ReportWriting, Software
Version1.23.0
In Bioconductor sinceBioC 3.12 (R-4.0) (6 years)
License Artistic-2.0
Depends
Imports BiocManager, fs, glue, rlang, styler, usethis (>= 2.0.1)
System Requirements
URLhttps://github.com/lcolladotor/biocthis
Bug Reportshttps://github.com/lcolladotor/biocthis/issues
See More
Suggests BiocStyle, covr, devtools, knitr, pkgdown, RefManageR, rmarkdown, sessioninfo, testthat, utils
Linking To
Enhances
Depends On Me
Imports Me HubPub
Suggests Me drugfindR, tripr
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biocthis_1.23.0.tar.gz
Windows Binary (x86_64) biocthis_1.23.0.zip
macOS Binary (big-sur-x86_64) biocthis_1.23.0.tgz
macOS Binary (sonoma-arm64) biocthis_1.23.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/biocthis
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/biocthis
Package Short Url https://bioconductor.org/packages/biocthis/
Package Downloads ReportDownload Stats