biodbKegg

DOI: 10.18129/B9.bioc.biodbKegg    

This is the development version of biodbKegg; for the stable release version, see biodbKegg.

biodbKegg, a library for connecting to the KEGG Database

Bioconductor version: Development (3.15)

The biodbKegg library is an extension of the biodb framework package that provides access to the KEGG databases Compound, Enzyme, Genes, Module, Orthology and Reaction. It allows to retrieve entries by their accession numbers. Web services like "find", "list" and "findExactMass" are also available. Some functions for navigating along the pathways have also been implemented.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbKegg")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("biodbKegg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbKegg")

 

HTML R Script Introduction to the biodbKegg package.
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, KEGG, Pathways, Software
Version 1.1.0
In Bioconductor since BioC 3.14 (R-4.1) (< 6 months)
License AGPL-3
Depends R (>= 4.1)
Imports R6, biodb(>= 1.1.9), chk, lifecycle
LinkingTo
Suggests BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, igraph, magick, lgr
SystemRequirements
Enhances
URL https://github.com/pkrog/biodbKegg
BugReports https://github.com/pkrog/biodbKegg/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbKegg_1.1.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/biodbKegg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbKegg
Package Short Url https://bioconductor.org/packages/biodbKegg/
Package Downloads Report Download Stats

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