bluster

DOI: 10.18129/B9.bioc.bluster    

This is the development version of bluster; for the stable release version, see bluster.

Clustering Algorithms for Bioconductor

Bioconductor version: Development (3.13)

Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("bluster")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bluster")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bluster")

 

HTML R Script 1. Clustering algorithms
HTML R Script 2. Clustering diagnostics
PDF   Reference Manual

Details

biocViews Clustering, GeneExpression, ImmunoOncology, SingleCell, Software, Transcriptomics
Version 1.1.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends
Imports stats, methods, utils, Matrix, Rcpp, igraph, S4Vectors, BiocParallel, BiocNeighbors
LinkingTo Rcpp
Suggests knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis
SystemRequirements C++11
Enhances
URL
Depends On Me
Imports Me mbkmeans, scDblFinder, scran
Suggests Me batchelor, scDblFinder
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bluster_1.1.0.tar.gz
Windows Binary bluster_1.1.0.zip
macOS 10.13 (High Sierra) bluster_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/bluster
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bluster
Package Short Url https://bioconductor.org/packages/bluster/
Package Downloads Report Download Stats

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