bluster

DOI: 10.18129/B9.bioc.bluster    

This is the development version of bluster; for the stable release version, see bluster.

Clustering Algorithms for Bioconductor

Bioconductor version: Development (3.14)

Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.

Author: Aaron Lun [aut, cre], Stephanie Hicks [ctb]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("bluster")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bluster")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bluster")

 

HTML R Script 1. Clustering algorithms
HTML R Script 2. Clustering diagnostics
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GeneExpression, ImmunoOncology, SingleCell, Software, Transcriptomics
Version 1.3.2
In Bioconductor since BioC 3.12 (R-4.0) (1 year)
License GPL-3
Depends
Imports stats, methods, utils, cluster, Matrix, Rcpp, igraph, S4Vectors, BiocParallel, BiocNeighbors
LinkingTo Rcpp
Suggests knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans, kohonen, apcluster
SystemRequirements C++11
Enhances
URL
Depends On Me OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.multisample, OSCA.workflows
Imports Me scDblFinder, scran
Suggests Me batchelor, dittoSeq, mbkmeans, mumosa
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bluster_1.3.2.tar.gz
Windows Binary bluster_1.3.2.zip (32- & 64-bit)
macOS 10.13 (High Sierra) bluster_1.3.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/bluster
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bluster
Package Short Url https://bioconductor.org/packages/bluster/
Package Downloads Report Download Stats

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