cellbaseR
Querying annotation data from the high performance Cellbase web
Bioconductor version: 3.24 · Package version: 1.37.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cellbaseR")Details
| Maintainer | Mohammed OE Abdallah <melsiddieg@gmail.com> |
| Author | Mohammed OE Abdallah |
| License | Apache License (== 2.0) |
| URL | https://github.com/melsiddieg/cellbaseR |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, Software, VariantAnnotation |
| Package Short Url | https://bioconductor.org/packages/cellbaseR/ |
Citation
From within R, enter citation("cellbaseR"):
Mohammed OE Abdallah. cellbaseR: Querying annotation data from the high performance Cellbase web. doi:10.18129/B9.bioc.cellbaseR, R package version 1.37.0, https://bioconductor.org/packages/cellbaseR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | cellbaseR_1.37.0.tar.gz |
| Windows binary (x86_64) | cellbaseR_1.37.0.zip |
| macOS binary (arm64) | cellbaseR_1.37.0.tgz |
| macOS binary (x86_64) | cellbaseR_1.37.0.tgz |
Dependencies
Depends: R (>= 3.4)
Imports: methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils, Rsamtools, BiocParallel, foreach, utils, parallel, doParallel
Suggests: BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation