cellmigRation
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics
Bioconductor version: 3.24 · Package version: 1.21.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Import TIFF images of fluorescently labeled cells, and track cell movements over time. Parallelization is supported for image processing and for fast computation of cell trajectories. In-depth analysis of cell trajectories is enabled by 15 trajectory analysis functions.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cellmigRation")Details
| Maintainer | Waldir Leoncio <w.l.netto@medisin.uio.no> |
| Author | Salim Ghannoum [aut, cph], Damiano Fantini [aut, cph], Waldir Leoncio [cre, aut], Øystein Sørensen [aut] |
| License | GPL-2 |
| URL | https://github.com/ocbe-uio/cellmigRation/ |
| Bug Reports | https://github.com/ocbe-uio/cellmigRation/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | CellBiology, DataImport, DataRepresentation, Software |
| Package Short Url | https://bioconductor.org/packages/cellmigRation/ |
Citation
From within R, enter citation("cellmigRation"):
Salim Ghannoum, Damiano Fantini, Waldir Leoncio, Øystein Sørensen. cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics. doi:10.18129/B9.bioc.cellmigRation, R package version 1.21.0, https://bioconductor.org/packages/cellmigRation.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | cellmigRation_1.21.0.tar.gz |
| Windows binary (x86_64) | cellmigRation_1.21.0.zip |
| macOS binary (arm64) | cellmigRation_1.21.0.tgz |
| macOS binary (x86_64) | cellmigRation_1.21.0.tgz |
Dependencies
Depends: R (>= 4.1), methods, foreach
Imports: tiff, graphics, stats, utils, reshape2, parallel, doParallel, grDevices, matrixStats, FME, SpatialTools, sp, vioplot, FactoMineR, Hmisc
Suggests: knitr, rmarkdown, dplyr, ggplot2, RUnit, BiocGenerics, BiocManager, kableExtra, rgl