DOI: 10.18129/B9.bioc.chimeraviz    

This is the development version of chimeraviz; for the stable release version, see chimeraviz.

Visualization tools for gene fusions

Bioconductor version: Development (3.7)

chimeraviz manages data from fusion gene finders and provides useful visualization tools.

Author: Stian Lågstad [aut, cre], Sen Zhao [ctb], Andreas M. Hoff [ctb], Bjarne Johannessen [ctb], Ole Christian Lingjærde [ctb], Rolf Skotheim [ctb]

Maintainer: Stian Lågstad <stianlagstad at>

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biocViews Alignment, Infrastructure, Software
Version 1.5.4
In Bioconductor since BioC 3.5 (R-3.4) (1 year)
License Artistic-2.0
Depends Biostrings, GenomicRanges, IRanges, Gviz, S4Vectors, ensembldb, AnnotationFilter
Imports methods, readr, grid, Rsamtools, GenomeInfoDb, GenomicAlignments, RColorBrewer, graphics, AnnotationDbi, RCircos,,, rmarkdown, graph, Rgraphviz, DT, plyr, dplyr, BiocStyle, ArgumentCheck
Suggests testthat, roxygen2, devtools, knitr
SystemRequirements bowtie, samtools, and egrep are required for some functionalities
Depends On Me
Imports Me
Suggests Me
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Source Package chimeraviz_1.5.4.tar.gz
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