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clippda

A package for the clinical proteomic profiling data analysis

Bioconductor version: 3.24 · Package version: 1.63.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

Methods for the nalysis of data from clinical proteomic profiling studies. The focus is on the studies of human subjects, which are often observational case-control by design and have technical replicates. A method for sample size determination for planning these studies is proposed. It incorporates routines for adjusting for the expected heterogeneities and imbalances in the data and the within-sample replicate correlations.

DOI: 10.18129/B9.bioc.clippda

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clippda")

Details

MaintainerStephen Nyangoma <s.o.nyangoma@bham.ac.uk>
AuthorStephen Nyangoma
LicenseGPL (>=2)
URLhttp://www.cancerstudies.bham.ac.uk/crctu/CLIPPDA.shtml
Source branchdevel
Build report Bioconductor build system, r-universe
biocViewsDifferentialExpression, MultipleComparison, OneChannel, Preprocessing, Proteomics, Software
Package Short Url https://bioconductor.org/packages/clippda/

Citation

From within R, enter citation("clippda"):

Stephen Nyangoma. clippda: A package for the clinical proteomic profiling data analysis. doi:10.18129/B9.bioc.clippda, R package version 1.63.0, https://bioconductor.org/packages/clippda.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageclippda_1.63.0.tar.gz
Windows binary (x86_64)clippda_1.63.0.zip
macOS binary (arm64)clippda_1.63.0.tgz
macOS binary (x86_64)clippda_1.63.0.tgz
Dependencies

Depends: R (>= 2.13.1), limma, statmod, rgl, lattice, scatterplot3d, graphics, grDevices, stats, utils, Biobase, tools, methods