conumee
Enhanced copy-number variation analysis using Illumina DNA methylation arrays
Bioconductor version: 3.24 · Package version: 1.47.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("conumee")Details
| Maintainer | Volker Hovestadt <conumee@hovestadt.bio> |
| Author | Volker Hovestadt, Marc Zapatka |
| License | GPL (>= 2) |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | CopyNumberVariation, DNAMethylation, MethylationArray, Microarray, Normalization, Preprocessing, QualityControl, Software |
| Package Short Url | https://bioconductor.org/packages/conumee/ |
Citation
From within R, enter citation("conumee"):
Volker Hovestadt, Marc Zapatka. conumee: Enhanced copy-number variation analysis using Illumina DNA methylation arrays. doi:10.18129/B9.bioc.conumee, R package version 1.47.1, https://bioconductor.org/packages/conumee.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | conumee_1.47.1.tar.gz |
| macOS binary (arm64) | conumee_1.47.1.tgz |
| macOS binary (x86_64) | conumee_1.47.1.tgz |
Dependencies
Depends: R (>= 3.5.0), minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICmanifest
Imports: methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges, Seqinfo
Reverse dependencies
Suggests Me (1): CopyNeutralIMA