copa
Functions to perform cancer outlier profile analysis.
Bioconductor version: 3.24 · Package version: 1.81.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("copa")Details
| Maintainer | James W. MacDonald <jmacdon@u.washington.edu> |
| Author | James W. MacDonald |
| License | Artistic-2.0 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, OneChannel, Software, TwoChannel, Visualization |
| Package Short Url | https://bioconductor.org/packages/copa/ |
Citation
From within R, enter citation("copa"):
James W. MacDonald. copa: Functions to perform cancer outlier profile analysis. doi:10.18129/B9.bioc.copa, R package version 1.81.0, https://bioconductor.org/packages/copa.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | copa_1.81.0.tar.gz |
| Windows binary (x86_64) | copa_1.81.0.zip |
| macOS binary (arm64) | copa_1.81.0.tgz |
| macOS binary (x86_64) | copa_1.81.0.tgz |