copa
This is the development version of copa; for the stable release version, see copa.
Functions to perform cancer outlier profile analysis.
Bioconductor version: Development (3.20)
COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.
Author: James W. MacDonald
Maintainer: James W. MacDonald <jmacdon at u.washington.edu>
Citation (from within R, enter
citation("copa")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("copa")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("copa")
copa Overview | R Script | |
Reference Manual |
Details
biocViews | DifferentialExpression, OneChannel, Software, TwoChannel, Visualization |
Version | 1.73.0 |
In Bioconductor since | BioC 1.8 (R-2.3) (18.5 years) |
License | Artistic-2.0 |
Depends | Biobase, methods |
Imports | |
System Requirements | |
URL |
See More
Suggests | colonCA |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | copa_1.73.0.tar.gz |
Windows Binary | copa_1.73.0.zip |
macOS Binary (x86_64) | copa_1.73.0.tgz |
macOS Binary (arm64) | copa_1.73.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/copa |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/copa |
Bioc Package Browser | https://code.bioconductor.org/browse/copa/ |
Package Short Url | https://bioconductor.org/packages/copa/ |
Package Downloads Report | Download Stats |