ddPCRclust
This is the development version of ddPCRclust; for the stable release version, see ddPCRclust.
All Bioconductor versions of ddPCRclust
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7
Clustering algorithm for ddPCR data
Bioconductor version: 3.24 · Package version: 1.33.0
The ddPCRclust algorithm can automatically quantify the CPDs of non-orthogonal ddPCR reactions with up to four targets. In order to determine the correct droplet count for each target, it is crucial to both identify all clusters and label them correctly based on their position. For more information on what data can be analyzed and how a template needs to be formatted, please check the vignette.
Author: Benedikt G. Brink [aut, cre], Justin Meskas [ctb], Ryan R. Brinkman [ctb]
Maintainer: Benedikt G. Brink <bbrink at cebitec.uni-bielefeld.de>
Citation
From within R, enter citation("ddPCRclust"):
Benedikt G. Brink. ddPCRclust: Clustering algorithm for ddPCR data. doi:10.18129/B9.bioc.ddPCRclust, R package version 1.33.0, https://bioconductor.org/packages/ddPCRclust.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("ddPCRclust")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.33.0 |
| License | Artistic-2.0 |
| URL | https://github.com/bgbrink/ddPCRclust |
| Bug Reports | https://github.com/bgbrink/ddPCRclust/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.7 (R-3.5) (8 years) |
| Downloads rank | 1411 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Clustering, Software, ddPCR |
| Package Short Url | https://bioconductor.org/packages/ddPCRclust/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ddPCRclust")| Bioconductor LaTeX Style | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | ddPCRclust_1.33.0.tar.gz |
| Windows binary (x86_64) | ddPCRclust_1.33.0.zip |
| macOS binary (arm64) | ddPCRclust_1.33.0.tgz |
| macOS binary (x86_64) | ddPCRclust_1.33.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ddPCRclust |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ddPCRclust |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5)
Imports: plotrix, clue, parallel, ggplot2, openxlsx, R.utils, flowCore, flowDensity (>= 1.13.3), SamSPECTRAL, flowPeaks
Suggests: BiocStyle
Reverse dependencies
Suggests Me (1): Polytect