DOI: 10.18129/B9.bioc.destiny    

This is the development version of destiny; for the stable release version, see destiny.

Creates diffusion maps

Bioconductor version: Development (3.9)

Create and plot diffusion maps.

Author: Philipp Angerer [cre, aut] (<>), Laleh Haghverdi [ctb], Maren Büttner [ctb] (<>), Fabian Theis [ctb] (<>), Carsten Marr [ctb] (<>), Florian Büttner [ctb] (<>)

Maintainer: Philipp Angerer <philipp.angerer at>

Citation (from within R, enter citation("destiny")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("destiny", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF Diffusion-Map-recap.pdf
PDF Diffusion-Maps.pdf
PDF Global-Sigma.pdf
PDF tidyverse.pdf
PDF   Reference Manual
Text   NEWS


biocViews CellBasedAssays, CellBiology, Clustering, Software, Visualization
Version 2.13.0
In Bioconductor since BioC 3.2 (R-3.2) (3.5 years)
License GPL
Depends R (>= 3.3.0)
Imports methods, graphics, grDevices, utils, stats, Matrix, Rcpp (>= 0.10.3), RcppEigen, Biobase, BiocGenerics, SummarizedExperiment, ggplot2, ggthemes, VIM, proxy, igraph, smoother, scales, scatterplot3d
LinkingTo Rcpp, RcppEigen, grDevices
Suggests nbconvertR, testthat, FNN, tidyr, SingleCellExperiment
SystemRequirements C++11
Enhances rgl, SingleCellExperiment
Depends On Me
Imports Me
Suggests Me CellTrails, monocle, scater, slingshot
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package destiny_2.13.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) destiny_2.13.0.tgz
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