epivizr
R Interface to epiviz web app
Bioconductor version: 3.24 · Package version: 2.43.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides connections to the epiviz web app (http://epiviz.cbcb.umd.edu) for interactive visualization of genomic data. Objects in R/bioc interactive sessions can be displayed in genome browser tracks or plots to be explored by navigation through genomic regions. Fundamental Bioconductor data structures are supported (e.g., GenomicRanges and RangedSummarizedExperiment objects), while providing an easy mechanism to support other data structures (through package epivizrData). Visualizations (using d3.js) can be easily added to the web app as well.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epivizr")Details
| Maintainer | Hector Corrada Bravo <hcorrada@gmail.com> |
| Author | Hector Corrada Bravo, Florin Chelaru, Llewellyn Smith, Naomi Goldstein, Jayaram Kancherla, Morgan Walter, Brian Gottfried |
| License | Artistic-2.0 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GUI, Infrastructure, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/epivizr/ |
Citation
From within R, enter citation("epivizr"):
Hector Corrada Bravo, Florin Chelaru, Llewellyn Smith, Naomi Goldstein, Jayaram Kancherla, Morgan Walter, Brian Gottfried. epivizr: R Interface to epiviz web app. doi:10.18129/B9.bioc.epivizr, R package version 2.43.0, https://bioconductor.org/packages/epivizr.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | epivizr_2.43.0.tar.gz |
| Windows binary (x86_64) | epivizr_2.43.0.zip |
| macOS binary (arm64) | epivizr_2.43.0.tgz |
| macOS binary (x86_64) | epivizr_2.43.0.tgz |
Dependencies
Depends: R (>= 3.5.0), methods
Imports: epivizrServer (>= 1.1.1), epivizrData (>= 1.3.4), GenomicRanges, S4Vectors, IRanges, bumphunter, GenomeInfoDb
Suggests: testthat, roxygen2, knitr, Biobase, SummarizedExperiment, antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle, minfi, rmarkdown
Reverse dependencies
Depends On Me (2): epivizrStandalone, scTreeViz