DOI: 10.18129/B9.bioc.epivizrStandalone    

This is the development version of epivizrStandalone; for the stable release version, see epivizrStandalone.

Run Epiviz Interactive Genomic Data Visualization App within R

Bioconductor version: Development (3.9)

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Author: Hector Corrada Bravo, Jayaram Kancherla

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrStandalone")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("epivizrStandalone", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML Introduction to epivizrStandalone
PDF   Reference Manual
Text   NEWS


biocViews GUI, Infrastructure, Software, Visualization
Version 1.11.0
In Bioconductor since BioC 3.3 (R-3.3) (3 years)
License MIT + file LICENSE
Depends R (>= 3.2.3), epivizr(>= 2.3.6), methods
Imports git2r, epivizrServer, GenomeInfoDb, BiocGenerics, GenomicFeatures, S4Vectors
Suggests testthat, knitr, rmarkdown, OrganismDbi(>= 1.13.9), Mus.musculus, Biobase, BiocStyle
Depends On Me
Imports Me metavizr
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epivizrStandalone_1.11.0.tar.gz
Windows Binary epivizrStandalone_1.11.0.zip
Mac OS X 10.11 (El Capitan) epivizrStandalone_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/epivizrStandalone
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epivizrStandalone
Package Short Url http://bioconductor.org/packages/epivizrStandalone/
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