DOI: 10.18129/B9.bioc.esetVis    

This is the development version of esetVis; for the stable release version, see esetVis.

Visualizations of expressionSet Bioconductor object

Bioconductor version: Development (3.9)

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

Author: Laure Cougnaud <laure.cougnaud at>

Maintainer: Laure Cougnaud <laure.cougnaud at>

Citation (from within R, enter citation("esetVis")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("esetVis", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews DataRepresentation, DimensionReduction, Pathways, PrincipalComponent, Software, Visualization
Version 1.9.0
In Bioconductor since BioC 3.4 (R-3.3) (2.5 years)
License GPL-3
Imports mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices, methods
Suggests ggplot2, ggvis, rbokeh, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package esetVis_1.9.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) esetVis_1.9.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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